women's skiing competes in the Northwest Collegiate Ski Conference (NWCSC) of the United States Collegiate Ski and Snowboard Association (USCSA), and its competitive swimming team competes as an Independent.
CofI competes in 20 intercollegiate varsity sports: Men's sports include baseball, basketball, cross country, football, golf, lacrosse, skiing, soccer, swimming & diving and track & field; while women's sports include basketball, cross country, golf, skiing, soccer, softball, swimming & diving, tennis, track & field and volleyball.
=== Football ===
In 2014, The College of Idaho re-instated its football program after a 37-year hiatus. The program is led by head coach Mike Moroski, who has posted a record of 53-38 since taking over the program and was voted the 2019 Frontier Conference Coach of the Year. From 2019 to 2022, the Yotes have posted a record of 29–7 and have won a at least a share of the Frontier Conference each year. The Yotes even posted their longest winning streak in school history from 2018 …
