The college is a member of the Division II level of the National Collegiate Athletic Association (NCAA), primarily competing in the Conference Carolinas since the 2023–24 academic year. The Mountain Lions previously competed in the Georgia Collegiate Athletic Association (GCAA) of the National Junior College Athletic Association (NJCAA) prior to the 2010–11 school year, as well as the Peach Belt Conference (PBC) from 2012–13 to 2022–23.
Young Harris competes in 16 intercollegiate varsity sports. Men's sports include baseball, basketball, cross country, golf, lacrosse, soccer, and tennis; women's sports include basketball, cross country, golf, lacrosse, soccer, softball, tennis, and volleyball; and co-ed sports include spirit cheerleading.
=== Move to NCAA Division II ===
The college originally applied to the NCAA in 2010, but the application was rejected. The school re-applied in 2011 and received acceptance into the three-year process to become a full member. As of the 2011–12 academic year, Young Harris was …